TargetTrack | Data Available for Download

Last updated: April 27, 2012

• README -- documentation of files available on this page

TargetTrack FASTA Files

Target Sequences

• targets.fa.gz -- target protein sequences (TargetDB header)
• proteinTargetSeqs.fasta.gz -- target protein sequences (PepcDB header)
• dnaTargetSeqs.fasta.gz -- target DNA sequences
• rnaTargetSeqs.fasta.gz -- target RNA sequences

Trial Sequences

• proteinTrialSeqs.fasta.gz -- trial protein sequences
• dnaTrialSeqs.fasta.gz -- trial DNA sequences
• rnaTrialSeqs.fasta.gz -- trial RNA sequences

PDB Structure Sequences

• pdb_released.fa.gz -- distinct released PDB chain sequences
• pdb_prereleased.fa.gz -- distinct prereleased PDB chain sequences

TargetTrack CSV Files

• targetpdb_info.csv -- all targets listed with corresponding PDB structure(s)

TargetTrack XML Files

All Targets and Protocols in TargetTrack

• tt.xml.gz

Current Contributing Centers

CSGID.xml.gz CSMP.xml.gz EFI.xml.gz GPCR.xml.gz JCSG.xml.gz MCSG.xml.gz MPID.xml.gz MPP.xml.gz MPSBC.xml.gz

MPSBYNMR.xml.gz NESG.xml.gz NYCOMPS.xml.gz NYSGRC.xml.gz SASTAD.xml.gz SSGCID.xml.gz TEMIMPS.xml.gz TMPC.xml.gz TRANSPORTPDB.xml.gz

Former Contributing Centers

ATCG3D.xml.gz BIGS.xml.gz BSGC.xml.gz BSGI.xml.gz CESG.xml.gz CHTSB.xml.gz ISFI.xml.gz ISPC.xml.gz MSGP.xml.gz NYSGXRC.xml.gz OCSP.xml.gz

OPPF.xml.gz RSGI.xml.gz S2F.xml.gz SECSG.xml.gz SGC.xml.gz SGPP.xml.gz SGX.xml.gz SPINE.xml.gz TB.xml.gz XMTB.xml.gz YSG.xml.gz

TargetTrack XML Schema Files

• targetTrack-v1.4.xsd -- current TargetTrack schema
• targetTrack-v1.3.xsd

Legacy Target Files

All Protein Targets in TargetTrack

• targets.xml.gz -- formatted in TargetDB schema target.dtd
• targetsV2.xml.gz -- formatted in TargetDB schema targetdb.v2.dtd